It is a bit unclear how you have processed the sections, are they cryostate or paraffin sections? If you feel that you have problems with penetration of the antibodies you might 1) increase the incubation times, 2) use detergents, 3) in case of paraffin, increase the deparaffination times. 4) in case of cryostate sections use acetone or chloroform to permeabilize the membranes in your tissues. etc etc. Just shortly write down you protocol and it will be easier to find out your problem.
jan